Regarding pet waste that contains eggs of parasites ... most kinds of parasites are host-specific (limited to same species of animal), but some can be transmitted to Man.
I'm no expert in this, but a veterinary website I came across some months ago indicated that roundworm eggs expelled in dog and cat feces are easily killed WHEN FRESH. If they are allowed to mature for a while, their shells become very resilient to many conditions, including extremes of temperature.
So, if anyone is going to use BSF for dog/cat waste disposal, it would probably be best to add FRESH feces rather than old, petrified ones. Now, this is just my theory, but all mammals have parasites, and that goes for those farm animals (hogs, cattle, horses, chickens) whose manure is routinely processed by BSF. And, since hogs/pigs have more diseases that can can be transmitted to Man than most other animals (incl. housepets), I wouldn't be surprised if their parasites are, too.
Use of care and common sense will reduce most problems from most things, and I'm sure BSF are no different.
Probably the biggest thing to keep in mind is not to use BSF to reduce waste from a certain species, then feed those BSF back to the same species. If you've got chickens and your neighbor has hogs (and you both use BSF), trade larvae.
Sue